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lenticrisprv2 opti puro  (Addgene inc)


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    Structured Review

    Addgene inc lenticrisprv2 opti puro
    Lenticrisprv2 Opti Puro, supplied by Addgene inc, used in various techniques. Bioz Stars score: 98/100, based on 517 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/lenticrisprv2+opti/lentiCRISPRv2+puro+(Plasmid+%2398290)/bio_rxiv__64898__2026__02__01__703113-230-14-16
    Average 98 stars, based on 517 article reviews
    lenticrisprv2 opti puro - by Bioz Stars, 2026-09
    98/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Genome-scale CRISPR screening in a single mouse liver
    Article Snippet: The pLentiCRISPRv2-Stuffer-HepmCherry and pLentiCRISPRv2-Stuffer-HepmTurquoise2 vectors were produced through the following steps: 1) removal of the EFS-NS promoter and Cas9 from the parental vector and insertion of a hepatocyte-specific promoter driving dsRed expression, 2) replacement of dsRed with mCherry or mTurquoise2, and 3) removal of the puromycin resistance cassette. .. To produce pLentiCRISPRv2-Stuffer-HepdsRed-Puro, 100 ng of a synthetic gblock encoding the HS-CRM8-TTRmin module upstream of dsRed (Integrated DNA Technologies) and 1 μg of LentiCRISPRv2-Opti (gift from David Sabatini, Addgene plasmid #163126), a LentiCRISPRv2 derivative containing an optimized scaffold were digested sequentially with NheI and BamHI (New England Biolabs). .. The vector and fragment were purified using the QIAquick Gel Extraction Kit (Qiagen) and ligated with T4 DNA Ligase (New England Biolabs) in an 11 μL reaction to replace the EFS-NS promoter and Cas9 with the gblock fragment.

    Article Title: The integrated stress response fine-tunes stem cell fate decisions in response to serine deprivation and tissue injury
    Article Snippet: For qPCR equal amounts of cDNA template were mixed with validated gene-specific primers, nuclease-free water and SYBR green PCR Master Mix (ThermoFisher). qPCR was performed with technical replicates using an Applied Biosystems 7900HT Fast Real-Time PCR machine and relative expression was calculated as RE = 2 −ΔΔCt . .. Five sgRNAs per gene were picked using the VBC-score tool 108 , and oligos with overhangs compatible for cloning into the LentiCRISPRV2-opti (Addgene plasmid 163126; LCV2-opti) all-in-one backbone were synthesized (Eurofins) 108 , 109 . ..

    Cloning:

    Article Title: The integrated stress response fine-tunes stem cell fate decisions in response to serine deprivation and tissue injury
    Article Snippet: For qPCR equal amounts of cDNA template were mixed with validated gene-specific primers, nuclease-free water and SYBR green PCR Master Mix (ThermoFisher). qPCR was performed with technical replicates using an Applied Biosystems 7900HT Fast Real-Time PCR machine and relative expression was calculated as RE = 2 −ΔΔCt . .. Five sgRNAs per gene were picked using the VBC-score tool 108 , and oligos with overhangs compatible for cloning into the LentiCRISPRV2-opti (Addgene plasmid 163126; LCV2-opti) all-in-one backbone were synthesized (Eurofins) 108 , 109 . ..

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    Synthesized:

    Article Title: The integrated stress response fine-tunes stem cell fate decisions in response to serine deprivation and tissue injury
    Article Snippet: For qPCR equal amounts of cDNA template were mixed with validated gene-specific primers, nuclease-free water and SYBR green PCR Master Mix (ThermoFisher). qPCR was performed with technical replicates using an Applied Biosystems 7900HT Fast Real-Time PCR machine and relative expression was calculated as RE = 2 −ΔΔCt . .. Five sgRNAs per gene were picked using the VBC-score tool 108 , and oligos with overhangs compatible for cloning into the LentiCRISPRV2-opti (Addgene plasmid 163126; LCV2-opti) all-in-one backbone were synthesized (Eurofins) 108 , 109 . ..

    Clone Assay:

    Article Title: Genome-wide CRISPR screens reveal multitiered mechanisms through which mTORC1 senses mitochondrial dysfunction.
    Article Snippet: The raptor antibody was from EMD Millipore (09-217); S6K1 pT389 (9234), S6K1 (2708), rpS6 pS235/S236 (2211), rpS6 (2217), Sestrin-2 (8487), ATF-4 (11815), raptor pS792 (2083), acetyl-CoA carboxylase (ACC) (3662), ACC pS79 (3661), AMPKα (5831), AMPKα pT172 (2535), and GCN2 (3302) antibodies were from Cell Signaling Technology; ND1 (19703-1-AP), Sestrin2 (10795-1-AP), and Redd1 (10638-1-AP) antibodies were from Proteintech; HRI (MBS2538144) antibody was from MyBioSource; and the HSD17B10 (TA500724) antibody was from Life Technologies. sgRNA Cloning, Lentiviral Production, and Lentiviral Transduction. .. Individual sgRNAs (SI Appendix, Dataset S3) were cloned into lentiCRISPRv2-Opti (Addgene #163126) at the BsmBI site as described by the depositor. ..

    Generated:

    Article Title: DMXL1 promotes recruitment of V1-ATPase to lysosomes upon TRPML1 activation.
    Article Snippet: .. U2OS-KO cells were generated by introducing Cas9 and single guide RNA (sgRNA) through lentiviral particles packaged using lenticrisprv2-opti (Addgene, cat. no. 163126) and lenticrisprv2-bsd (Addgene, cat. no. 98293). ..

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    other:

    Article Title: The integrated stress response fine-tunes stem cell fate decisions upon serine deprivation and tissue injury.
    Article Snippet: The following primary antibodies and dilutions were used: PHGDH (rabbit, 1:1,000, Sigma); ATF4 (rabbit, 1:1000, Cell Signaling), phospho-eIF2⍺ (rabbit, 1:1000, Cell Signaling), total eIF2⍺ (rabbit, 1:5,000, Cell Signaling), ASNS (1:2000; Proteintech); phosphoPERK (T980) (rabbit, 1:1000, Cell Signaling), total PERK (rabbit, 1:500, Cell Signaling), phospho-GCN2 (T899) (rabbit, 1:500, Abcam), total GCN2 (rabbit, 1:1000, Cell Signaling), PSAT1 (mouse, 1:500, Abnova), PSAT1 (rabbit, 1:1000, Proteintech), PSPH (rabbit, 1:500, Sigma), CAS9 (mouse, 1:1000, Active Motif), H3K27me3 (rabbit, 1:1000, Cell Signaling), H3 (mouse, 1:5000, Cell Signaling), and VCL (mouse, 1:5000, Sigma).

    Knock-Out:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    CRISPR:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    Infection:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    Ligation:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    Isolation:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    Fluorescence:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..

    FACS:

    Article Title: Solute carrier family 46 member 3 (SLC46A3) as marker for lipid-based nanoparticle cancer therapy and diagnostics
    Article Snippet: .. SLC46A3 Knock-Out Via CRISPR-Cas9 in T47D Cells SLC46A3 knock-out T47D cell lines were generated by infection with lentiCRISPRv2-Opti (Addgene #163126) vectors encoding Cas9 and single guide RNAs (sgRNAs).51 The following oligonucleotides were used for sgRNA cloning and include cloning overhangs for ligation after BsmBI digest of lentiCRISPRv2-Opti vector: sgGFP_F: (SEQ ID NO: 5) caccGGGCGAGGAGCTGTTCACCG sgGFP_R: (SEQ ID NO: 6) aaacCGGTGAACAGCTCCTCGCCC sgSLC46A3_F: (SEQ ID NO: 7) caccgAAAGCAAGCTCCCCAAAATG sgSLC46A3_R: (SEQ ID NO: 8) aaacCATTTTGGGGAGCTTGCTTTc Clonal knock-out cell lines were isolated through fluorescence-activated cell sorting, and biallelic frame-shifts were confirmed by deep-sequencing (allele 1: −32 bp frameshift 501 reads; allele 2: −10 bp frameshift; 477 reads). ..



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